PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0389s0330.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 880aa    MW: 96324.2 Da    PI: 5.7394
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0389s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24147248199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v
  SapurV1A.0389s0330.1.p 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSV 231
                             99*********************999*****954444.4.38********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+v+v+r+
  SapurV1A.0389s0330.1.p 232 LFI--RDEKSQLMVGVRRA 248
                             ***..4577778*****97 PP

2Auxin_resp111.11.1e-36273356183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aaha++++s+F+++YnPra++s+Fv+++ k++ka+  ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  SapurV1A.0389s0330.1.p 273 AAHATANRSPFTIFYNPRACPSDFVIPLIKFRKAVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356
                             79********************************988*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-46134276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41141261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-23146247No hitNo description
SMARTSM010191.8E-25147249IPR003340B3 DNA binding domain
PfamPF023621.9E-22147248IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253147249IPR003340B3 DNA binding domain
PfamPF065071.1E-31273356IPR010525Auxin response factor
PROSITE profilePS5174514.85828879IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MGSVEEKMKT GVLVNGAQAN LLEEMKLLKE FQDQSGIRKA INSELWYACA GPLVSLPQVG  60
SLVYYFPQGH SEQVAVSTRR SATSQIPNYP NLPSQLLCQV HNVTQHADKD TDEIYAQMSL  120
QPVNSEKDVF PIPDFGLKPS KHPSDFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRDEKSQ  240
LMVGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHATANR SPFTIFYNPR ACPSDFVIPL  300
IKFRKAVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD  360
EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDTEWGSLV KRPLSWLPGS  420
GNGNLPYASM SNMCSEQLIN MLMKPHPINY PGICGTAPPE VSATKVTSID VKNMQATNNQ  480
MPQLNQPGVT SLENQNYSQI CLDQSDAINS SSSKINVAGK SFAASEIENQ TSVGVSEGNL  540
KAESHLPDQL SQLTSTGECD VQKALLCPLT QQNATNHLEF QNQNQGHSQL QSSLWPTQSL  600
PESSLLNSQQ IHAPLADATA LNCSLPFLDA DEWISHPMSL AGMYRSGPLS MFGLQDPSVV  660
FPEAINPSLP FMNQDVWDHQ ISNSRILSQA NQLIPLTQKD PCSLNSGAVK DLSDESNDQS  720
GIYGSLNIDA SNGGGSVVDP SVSSAIIDEF CTLKGADLQN ASDCLVGNLS SSQDVQSQIT  780
SASLADSQAF SRQDFPDNSG GTSSSNIDFD NSNLLQNSSW QQVAPRVRTY TKVQKTGSVG  840
RSIDVSRFKN YEELCSAIEC MFGLDGLLNN PKRSGWKLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013815392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307706.20.0hypothetical protein POPTR_0005s25800g
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLB9H4U40.0B9H4U4_POPTR; Auxin response factor
STRINGPOPTR_0005s25800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein